Timetable for foundingGIDE Community Event 2024
Day 1, Thursday 31.10.2024
Session on Policy and Funders, Communities
| Time (JST / UTC+9) | Session on Policy and Funders, Communities |
|---|---|
| 12:30 – 14:00 | Registration and Lunch |
| 14:00 – 14:10 | Shuichi Onami Team Leader, Laboratory for Developmental Dynamics, RIKEN, Japan Opening and Welcome |
| 14:10 – 14:20 | John Eriksson Director General, Euro-BioImaging ERIC, Finland Opening and Welcome |
| 14:20 – 14:30 | Aastha Mathur Head of Image Data Services, Euro-BioImaging Bio-Hub, Germany A Global Image Data Ecosystem (GIDE) |
| Session on Policy and Funders, Communities Moderator: Aastha Mathur | |
| 14:30 – 14:45 | Kazutsuna Yamaji Professor, Research Center for Open Science and Data Platform, National Institute of Informatics, Japan |
| 14:45 – 15:00 | Lucy Collinson Head of Electron Microscopy, Francis Crick Institute, UK The volume EM community, and data in correlative and multimodal imaging |
| 15:00 – 15:15 | Masanori Arita Head, Bioinformation and DNA Data Bank of Japan Center (DDBJ), National Institute of Genetics, Japan |
| 15:15 – 15:30 | Anne Plant NIST Fellow, National Institute of Standards and Technology, United States Metrology Meets Data Sharing |
| 15:30 – 15:45 | Wojtek Goscinski Chief Executive Officer of National Imaging Facility, Australia An Overview of the Australian Digital Research Infrastructure Strategy |
| 15:45 – 16:45 | Coffee Break |
| 16:45 – 18:00 | Panel discussion: Policy and Funders, Communities Chair: Antje Keppler, Section Director at Euro-BioImaging ERIC and Global BioImaging Coordinator, Germany Shaofeng Hu, Director, Division of Science Policy and Basic Sciences, UNESCO, France Herbert Schaden, Vice President and Head of Global Academia Key Account Management, Carl Zeiss Microscopy GmbH, Germany Jo McEntyre, Deputy Director, EMBL European Bioinformatics Institute, UK Masanori Arita, Team Leader, DNA Data Bank of Japan (DDBJ), National Institute of Genetics, Japan Jan Ellenberg, Director of SciLifeLab, Sweden and Head of EMBL Imaging Center, Germany |
| 18:15 – open | Dinner |
Day 2, Friday 1.11.2024,
08:30 – 14:00
Session on Ontology and Metadata
| Time (JST / UTC+9) | Session on Ontology and Metadata Moderator: Maria Mirza |
|---|---|
| 08:30 – 09:00 | Arrival |
| 09:00 – 09:20 | Aastha Mathur Head of Image Data Services, Euro-BioImaging Bio-Hub, Germany Towards a Global Image Data Ecosystem (GIDE) |
| 09:20 – 09:40 | Matthew Hartley Team Leader, EMBL European Bioinformatics Institute, United Kingdom Image data interoperability with OME-NGFF, RO-Crate and linked data |
| 09:40 – 10:00 | David Poger Microscopy Australia, The University of Sydney, Australia Australian PID strategy |
| 10:00 – 10:20 | Shuichi Onami Team Leader, Center for Biosystems Dynamics Research, RIKEN, Japan Landscape analysis of metadata usage in major bioimage repositories |
| 10:20 – 10:40 | Thomas Close Informatics Fellow, National Imaging Facility, The University of Sydney, Australia Frametree: mapping data trees onto frames for “in-place” analysis of large datasets |
| 10:40 – 11:20 | Coffee Break |
| 11:20 – 11:40 | Josh Moore Head of Research Data Management, German BioImaging, Germany OME2024 NGFF Challenge Results |
| 11:40 – 13:00 | Breakout session 1. Sustaining and coordinating a Global Bioimage Data Ecosystem Co-Chairs: Aastha Mathur, David Poger Focus: strategies for a sustainable GIDE, focusing on aligning efforts, preventing duplication, and promoting collaboration and inclusivity across the bioimaging community. 2. Harmonizing Metadata Models: Bridging Efforts and Overcoming Challenges Co-Chairs: Shuichi Onami, Matthew Hartley Focus: the technical challenges of harmonizing metadata models across bioimaging repositories with focus on the current landscape, and strategies for collaboration to ensure alignment. 3. Working towards a GIDE: Community roles and opportunities Co-Chairs: Yara Reis, Peter Bugeia Focus: how the bioimaging community can contribute to GIDE’s success by identifying roles and collaborations, ensuring it aligns with global initiatives and community needs |
| 13:00 – 14:00 | Lunch |
14:00 – 18:00
Session on Towards FAIR image data
| Time (JST / UTC+9) | Session on Towards FAIR image data Moderator: Koji Kyoda |
|---|---|
| 14:00 – 14:25 | Stefania Marcotti Research Associate, King’s College London, United Kingdom Data in the wild – field notes from a core facility |
| 14:25 – 14:50 | Caterina Strambio de Castilla Assistant Professor, The University of Massachusetts Chan Medical School, United States Is it time for REMBI 2.0? Bringing the community together for next-gen bioimage metadata harmonization |
| 14:50 – 15:15 | Aswin Narayanan Imaging Informatics Fellow, National Imaging Facility, The University of Queensland, Australia Open data and open analyses in Neurodesk |
| 15:15 – 15:40 | Adán Guerrero Associate Professor, Departament of Developmental Genetics and Molecular Physiology, Universidad Nacional Autónoma de México Challenges and Opportunities for FAIR Image Data in Latin American Bioimaging, Insights from the Data Science for Bioimaging Working Group |
| 15:40 – 16:05 | Toshiaki Katayama Project Professor (Vice director), Database Center for Life Science, Japan Tools for integrated data |
| 16:05 – 16:40 | Coffee Break |
| 16:40 – 18:00 | Panel discussion: Metadata, Ontologies and Towards FAIR image data Co-Chair: Josh Moore, Head of Research Data Management, German Bioimaging, Germany Co-Chair: Matthew Hartley, Team Leader, EMBL European Bioinformatics Institute, United Kingdom Shuichi Onami, Team Leader, Center for Biosystems Dynamics Research, RIKEN, Japan Nicholas Condon, Senior Microscopist & CZI Imaging Scientist, The University of Queensland, Australia Perrine Paul-Gilloteaux, Research Engineer, CNRS Nantes France Bio-Imaging, France Stephen Jett, Chan Zuckerberg Initiative Imaging Program Manager, USA Joy Owango, Executive Director Training Centre in Communication, The Africa PID Alliance, University of Nairobi |
| 18:00 – 18:15 | Aastha Mathur Head of Image Data Services, Euro-BioImaging Bio-Hub, Germany Future directions for a Global Image Data Ecosystem (GIDE) |